Home institute(s): Earlham Institute
Funders: BBSRC, CGIAR, Earlham Institute
Initially funded by a BBSRC grant, 2014-2018, subsequently supported through the Earlham Institute Strategic Programme. Further funding provided by the CGIAR in order to support interoperability of COPO with the GARDIAN search tool and CG Core metadata standard.
Partners (past & present): EMBL-EBI, Oxford e-Research Centre, University of York
Desired partners: Darwin Tree of Life, Wellcome Sanger Institute
Functionality: Accession index, Annotation tool, Data deposition broker
Domain: Genomics, Plant Breeding
Data type(s): Figures, Presentations, Publications, Agronomic, Genomic, Phenotypic (metadata – no current repository for phenomic data), Socioeconomic (agricultural)
Software used: CyVerse, Ontology Lookup Service, ORCID
Standards used: CG Core, DOI, ISA-Tools, MIAPPE, PubMedID
Current interoperability: GARDIAN
Desired interoperability: Germinate
Planned interoperability: EMBL-EBI BioImaging repository
System update procedures: Developed by core team,Open source versions can be forked
Curation type: guided, Manual
User training options: Wizards guide users through the registration process.
Approximate number of users: 60-70
Data system type: Data annotation deposition and indexing portal, incorporating web interfaces and APIs.
Current users: CG centre data managers, Earlham Institute
Reference usecase(s): CGIAR Centres